IL_7UPH_133

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

7UPH|1|I|A|3295, 7UPH|1|I|C|3310, 7UPH|1|I|U|3314

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UPH_133 not in the Motif Atlas

Geometric match to IL_5J7L_313

Geometric discrepancy: 0.2847

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

7UPH|1|I|U|3292
7UPH|1|I|G|3293
7UPH|1|I|C|3294
7UPH|1|I|A|3295
7UPH|1|I|A|3296
7UPH|1|I|A|3297
7UPH|1|I|C|3298
*
7UPH|1|I|G|3307
7UPH|1|I|G|3308
7UPH|1|I|A|3309
7UPH|1|I|C|3310
7UPH|1|I|G|3311
7UPH|1|I|U|3312
7UPH|1|I|A|3313
7UPH|1|I|U|3314
7UPH|1|I|A|3315

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain K

50S ribosomal protein L2