IL_7UPH_169
3D structure
- PDB id
- 7UPH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a ribosome with tethered subunits
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.18 Å
Loop
- Sequence
- UGUUC*GGUAG
- Length
- 10 nucleotides
- Bulged bases
- 7UPH|1|I|U|4183, 7UPH|1|I|U|4184
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7UPH_169 not in the Motif Atlas
- Geometric match to IL_5J7L_348
- Geometric discrepancy: 0.3335
- The information below is about IL_5J7L_348
- Detailed Annotation
- UAA/GAN related, with intercalation
- Broad Annotation
- UAA/GAN related, with intercalation
- Motif group
- IL_23774.1
- Basepair signature
- cWW-L-R-L-tHS-cWW
- Number of instances in this motif group
- 11
Unit IDs
7UPH|1|I|U|4181
7UPH|1|I|G|4182
7UPH|1|I|U|4183
7UPH|1|I|U|4184
7UPH|1|I|C|4185
*
7UPH|1|I|G|4212
7UPH|1|I|G|4213
7UPH|1|I|U|4214
7UPH|1|I|A|4215
7UPH|1|I|G|4216
Current chains
- Chain I
- Tethered rRNA
Nearby chains
- Chain L
- 50S ribosomal protein L3
- Chain V
- 50S ribosomal protein L17
- Chain o
- 50S ribosomal protein L19
Coloring options: