IL_7UPH_203

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

GUGAGG*UGGAGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UPH_203 not in the Motif Atlas

Geometric match to IL_3FTF_001

Geometric discrepancy: 0.3994

The information below is about IL_3FTF_001

Detailed Annotation

Quadruple sheared

Broad Annotation

No text annotation

Motif group

IL_06136.2

Basepair signature

cWW-tHS-cWW-tHS-tSH-tSH-cWW

Number of instances in this motif group

6

Unit IDs

7UPH|1|I|G|3213
7UPH|1|I|U|3214
7UPH|1|I|G|3215
7UPH|1|I|A|3216
7UPH|1|I|G|3217
7UPH|1|I|G|3218
*
7UPH|1|I|U|3230
7UPH|1|I|G|3231
7UPH|1|I|G|3232
7UPH|1|I|A|3233
7UPH|1|I|G|3234
7UPH|1|I|C|3235

Current chains

Chain I

Tethered rRNA

Nearby chains