IL_7WTM_019

3D structure

PDB id

7WTM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Dis-E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UAUCAA*UUUCAACG

Length

14 nucleotides

Bulged bases

7WTM|1|C2|U|313, 7WTM|1|C2|C|351

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7WTM_019 not in the Motif Atlas

Geometric match to IL_4V88_402

Geometric discrepancy: 0.105

The information below is about IL_4V88_402

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

7WTM|1|C2|U|311
7WTM|1|C2|A|312
7WTM|1|C2|U|313
7WTM|1|C2|C|314
7WTM|1|C2|A|315
7WTM|1|C2|A|316
*
7WTM|1|C2|U|348
7WTM|1|C2|U|349
7WTM|1|C2|U|350
7WTM|1|C2|C|351
7WTM|1|C2|A|352
7WTM|1|C2|A|353
7WTM|1|C2|C|354
7WTM|1|C2|G|355

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SI

40S ribosomal protein S8-A

Chain SL

40S ribosomal protein S11-A

Chain SX

40S ribosomal protein S23-A