IL_7WTM_052

3D structure

PDB id

7WTM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Dis-E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7WTM_052 not in the Motif Atlas

Geometric match to IL_4V88_436

Geometric discrepancy: 0.1108

The information below is about IL_4V88_436

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

7WTM|1|C2|C|990
7WTM|1|C2|G|991
7WTM|1|C2|A|992
7WTM|1|C2|A|993
7WTM|1|C2|G|994
*
7WTM|1|C2|C|1010
7WTM|1|C2|G|1011
7WTM|1|C2|U|1012
7WTM|1|C2|A|1013
7WTM|1|C2|G|1014

Current chains

Chain C2

18S rRNA

Nearby chains

Chain JL

Dimethyladenosine transferase

Chain SO

40S ribosomal protein S14-A