IL_7WTR_050

3D structure

PDB id

7WTR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGGGG*CAAG

Length

9 nucleotides

Bulged bases

7WTR|1|C2|G|876

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7WTR_050 not in the Motif Atlas

Geometric match to IL_4V88_431

Geometric discrepancy: 0.0911

The information below is about IL_4V88_431

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

7WTR|1|C2|C|874
7WTR|1|C2|G|875
7WTR|1|C2|G|876
7WTR|1|C2|G|877
7WTR|1|C2|G|878
*
7WTR|1|C2|C|950
7WTR|1|C2|A|951
7WTR|1|C2|A|952
7WTR|1|C2|G|953

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SB

40S ribosomal protein S1-A

Chain SN

40S ribosomal protein S13