IL_7WTR_078

3D structure

PDB id

7WTR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGCU*AAAAG

Length

9 nucleotides

Bulged bases

7WTR|1|C2|A|1754

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7WTR_078 not in the Motif Atlas

Geometric match to IL_7R9F_001

Geometric discrepancy: 0.3209

The information below is about IL_7R9F_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25872.4

Basepair signature

cWW-cWW-cWH-cWW

Number of instances in this motif group

5

Unit IDs

7WTR|1|C2|C|1644
7WTR|1|C2|G|1645
7WTR|1|C2|C|1646
7WTR|1|C2|U|1647
*
7WTR|1|C2|A|1753
7WTR|1|C2|A|1754
7WTR|1|C2|A|1755
7WTR|1|C2|A|1756
7WTR|1|C2|G|1757

Current chains

Chain C2

18S rRNA

Nearby chains

Chain CC

Ribosome biogenesis protein TSR1

Chain SX

40S ribosomal protein S23-A