IL_7WTU_016

3D structure

PDB id

7WTU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A1 (without CK1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAUU*ACCUCGGG

Length

12 nucleotides

Bulged bases

7WTU|1|2|U|305, 7WTU|1|2|G|307

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7WTU_016 not in the Motif Atlas

Geometric match to IL_1GID_008

Geometric discrepancy: 0.3646

The information below is about IL_1GID_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85033.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

7WTU|1|2|C|216
7WTU|1|2|A|217
7WTU|1|2|U|218
7WTU|1|2|U|219
*
7WTU|1|2|A|302
7WTU|1|2|C|303
7WTU|1|2|C|304
7WTU|1|2|U|305
7WTU|1|2|C|306
7WTU|1|2|G|307
7WTU|1|2|G|308
7WTU|1|2|G|309

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

40S ribosomal protein S4, X isoform

Chain I

40S ribosomal protein S8