3D structure

PDB id
7WTU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A1 (without CK1)
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
CGGGG*CAAG
Length
9 nucleotides
Bulged bases
7WTU|1|2|G|933
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7WTU_048 not in the Motif Atlas
Geometric match to IL_4V88_431
Geometric discrepancy: 0.1289
The information below is about IL_4V88_431
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_67085.2
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
55

Unit IDs

7WTU|1|2|C|931
7WTU|1|2|G|932
7WTU|1|2|G|933
7WTU|1|2|G|934
7WTU|1|2|G|935
*
7WTU|1|2|C|1007
7WTU|1|2|A|1008
7WTU|1|2|A|1009
7WTU|1|2|G|1010

Current chains

Chain 2
18S rRNA

Nearby chains

Chain B
40S ribosomal protein S3a
Chain N
40S ribosomal protein S13

Coloring options:


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