3D structure

PDB id
7WTU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A1 (without CK1)
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
CGAAG*CGUAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7WTU_052 not in the Motif Atlas
Geometric match to IL_4V88_436
Geometric discrepancy: 0.0846
The information below is about IL_4V88_436
Detailed Annotation
tSH-tHW-tHS
Broad Annotation
No text annotation
Motif group
IL_17136.4
Basepair signature
cWW-R-L-tHS-tHW-cWW
Number of instances in this motif group
18

Unit IDs

7WTU|1|2|C|1047
7WTU|1|2|G|1048
7WTU|1|2|A|1049
7WTU|1|2|A|1050
7WTU|1|2|G|1051
*
7WTU|1|2|C|1067
7WTU|1|2|G|1068
7WTU|1|2|U|1069
7WTU|1|2|A|1070
7WTU|1|2|G|1071

Current chains

Chain 2
18S rRNA

Nearby chains

Chain O
40S ribosomal protein S14

Coloring options:


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