3D structure

PDB id
7WTU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A1 (without CK1)
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
ACCA*UCCCU
Length
9 nucleotides
Bulged bases
7WTU|1|2|C|1215, 7WTU|1|2|C|1216
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7WTU_059 not in the Motif Atlas
Geometric match to IL_4V88_443
Geometric discrepancy: 0.1179
The information below is about IL_4V88_443
Detailed Annotation
C-loop
Broad Annotation
No text annotation
Motif group
IL_63596.9
Basepair signature
cWW-cWS-cHS-L-cWW-tWH
Number of instances in this motif group
15

Unit IDs

7WTU|1|2|A|1214
7WTU|1|2|C|1215
7WTU|1|2|C|1216
7WTU|1|2|A|1217
*
7WTU|1|2|U|1681
7WTU|1|2|C|1682
7WTU|1|2|C|1683
7WTU|1|2|C|1684
7WTU|1|2|U|1685

Current chains

Chain 2
18S rRNA

Nearby chains

Chain F
40S ribosomal protein S5
Chain K
RRP12-like protein
Chain c
40S ribosomal protein S28
Chain q
Probable 18S rRNA (guanine-N(7))-methyltransferase
Chain w
Bystin

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