IL_7WTV_068

3D structure

PDB id

7WTV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGC*GAUG

Length

7 nucleotides

Bulged bases

7WTV|1|2|A|1498

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7WTV_068 not in the Motif Atlas

Geometric match to IL_5Z1I_002

Geometric discrepancy: 0.2498

The information below is about IL_5Z1I_002

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_31737.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

7WTV|1|2|U|1329
7WTV|1|2|G|1330
7WTV|1|2|C|1331
*
7WTV|1|2|G|1497
7WTV|1|2|A|1498
7WTV|1|2|U|1499
7WTV|1|2|G|1500

Current chains

Chain 2

18S rRNA

Nearby chains

Chain u

Pre-rRNA-processing protein TSR1 homolog

Chain w

Bystin