IL_7XNY_040

3D structure

PDB id

7XNY (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

7XNY|1|L1|G|748, 7XNY|1|L1|C|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7XNY_040 not in the Motif Atlas

Geometric match to IL_5TBW_020

Geometric discrepancy: 0.1492

The information below is about IL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

7XNY|1|L1|G|745
7XNY|1|L1|A|746
7XNY|1|L1|A|747
7XNY|1|L1|G|748
7XNY|1|L1|G|749
7XNY|1|L1|U|750
7XNY|1|L1|G|751
7XNY|1|L1|G|752
*
7XNY|1|L1|U|911
7XNY|1|L1|G|912
7XNY|1|L1|U|913
7XNY|1|L1|U|914
7XNY|1|L1|A|915
7XNY|1|L1|C|916
7XNY|1|L1|A|917
7XNY|1|L1|G|918
7XNY|1|L1|C|919

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LM

60S ribosomal protein L14

Chain LS

60S ribosomal protein L18a