IL_7XNY_087

3D structure

PDB id

7XNY (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

UAUAGACAG*CCGAA

Length

14 nucleotides

Bulged bases

7XNY|1|L1|A|1960

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7XNY_087 not in the Motif Atlas

Homologous match to IL_8C3A_057

Geometric discrepancy: 0.2908

The information below is about IL_8C3A_057

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90538.5

Basepair signature

cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L

Number of instances in this motif group

6

Unit IDs

7XNY|1|L1|U|1957
7XNY|1|L1|A|1958
7XNY|1|L1|U|1959
7XNY|1|L1|A|1960
7XNY|1|L1|G|1961
7XNY|1|L1|A|1962
7XNY|1|L1|C|1963
7XNY|1|L1|A|1964
7XNY|1|L1|G|1965
*
7XNY|1|L1|C|2022
7XNY|1|L1|C|2023
7XNY|1|L1|G|2024
7XNY|1|L1|A|2025
7XNY|1|L1|A|2026

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LS

60S ribosomal protein L18a

Chain Lm

Ubiquitin-60S ribosomal protein L40