IL_7XNY_109
3D structure
- PDB id
- 7XNY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- AACAA(OMU)G*CUAU
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7XNY_109 not in the Motif Atlas
- Homologous match to IL_8C3A_080
- Geometric discrepancy: 0.0925
- The information below is about IL_8C3A_080
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_49460.3
- Basepair signature
- cWW-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
7XNY|1|L1|A|2832
7XNY|1|L1|A|2833
7XNY|1|L1|C|2834
7XNY|1|L1|A|2835
7XNY|1|L1|A|2836
7XNY|1|L1|OMU|2837
7XNY|1|L1|G|2838
*
7XNY|1|L1|C|3850
7XNY|1|L1|U|3851
7XNY|1|L1|A|3852
7XNY|1|L1|U|3853
Current chains
- Chain L1
- 28S rRNA
Nearby chains
- Chain LB
- 60S ribosomal protein L3
- Chain LP
- 60S ribosomal protein L17
- Chain Ld
- 60S ribosomal protein L31
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