IL_7XNY_123

3D structure

PDB id

7XNY (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

7XNY|1|L1|A|3746, 7XNY|1|L1|A|3747

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7XNY_123 not in the Motif Atlas

Homologous match to IL_5TBW_085

Geometric discrepancy: 0.0693

The information below is about IL_5TBW_085

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

7XNY|1|L1|U|3704
7XNY|1|L1|G|3705
*
7XNY|1|L1|U|3745
7XNY|1|L1|A|3746
7XNY|1|L1|A|3747
7XNY|1|L1|A|3748

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8