IL_7XNY_159
3D structure
- PDB id
- 7XNY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- CUCAGUAC*GGAACCG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7XNY_159 not in the Motif Atlas
- Homologous match to IL_8C3A_125
- Geometric discrepancy: 0.0655
- The information below is about IL_8C3A_125
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
7XNY|1|L1|C|4596
7XNY|1|L1|U|4597
7XNY|1|L1|C|4598
7XNY|1|L1|A|4599
7XNY|1|L1|G|4600
7XNY|1|L1|U|4601
7XNY|1|L1|A|4602
7XNY|1|L1|C|4603
*
7XNY|1|L1|G|4608
7XNY|1|L1|G|4609
7XNY|1|L1|A|4610
7XNY|1|L1|A|4611
7XNY|1|L1|C|4612
7XNY|1|L1|C|4613
7XNY|1|L1|G|4614
Current chains
- Chain L1
- 28S rRNA
Nearby chains
- Chain LB
- 60S ribosomal protein L3
- Chain LH
- 60S ribosomal protein L9
- Chain LV
- 60S ribosomal protein L23
- Chain Lm
- Ubiquitin-60S ribosomal protein L40
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