IL_7XNY_162

3D structure

PDB id

7XNY (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

UGUA(PSU)(OMG)U*GCGAAG

Length

13 nucleotides

Bulged bases

7XNY|1|L1|U|4634

QA status

Modified nucleotides: PSU, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7XNY_162 not in the Motif Atlas

Geometric match to IL_3BBM_001

Geometric discrepancy: 0.2926

The information below is about IL_3BBM_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47352.2

Basepair signature

cWW-cWW-tSH-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

7XNY|1|L1|U|4632
7XNY|1|L1|G|4633
7XNY|1|L1|U|4634
7XNY|1|L1|A|4635
7XNY|1|L1|PSU|4636
7XNY|1|L1|OMG|4637
7XNY|1|L1|U|4638
*
7XNY|1|L1|G|4661
7XNY|1|L1|C|4662
7XNY|1|L1|G|4663
7XNY|1|L1|A|4664
7XNY|1|L1|A|4665
7XNY|1|L1|G|4666

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LW

60S ribosomal protein L24

Chain Ld

60S ribosomal protein L31