IL_7XNY_296

3D structure

PDB id

7XNY (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GUAGU(A2M)(OMG)*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7XNY_296 not in the Motif Atlas

Homologous match to IL_8C3A_065

Geometric discrepancy: 0.07

The information below is about IL_8C3A_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

7XNY|1|L1|G|2358
7XNY|1|L1|U|2359
7XNY|1|L1|A|2360
7XNY|1|L1|G|2361
7XNY|1|L1|U|2362
7XNY|1|L1|A2M|2363
7XNY|1|L1|OMG|2364
*
7XNY|1|L1|C|3858
7XNY|1|L1|G|3859
7XNY|1|L1|A|3860
7XNY|1|L1|A|3861
7XNY|1|L1|A|3862
7XNY|1|L1|C|3863

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LP

60S ribosomal protein L17