IL_7XNY_309

3D structure

PDB id

7XNY (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

UGUA(PSU)(OMG)*CGAAG

Length

11 nucleotides

Bulged bases

7XNY|1|L1|U|4634, 7XNY|1|L1|PSU|4636

QA status

Modified nucleotides: PSU, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7XNY_309 not in the Motif Atlas

Homologous match to IL_8C3A_127

Geometric discrepancy: 0.4521

The information below is about IL_8C3A_127

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

7XNY|1|L1|U|4632
7XNY|1|L1|G|4633
7XNY|1|L1|U|4634
7XNY|1|L1|A|4635
7XNY|1|L1|PSU|4636
7XNY|1|L1|OMG|4637
*
7XNY|1|L1|C|4662
7XNY|1|L1|G|4663
7XNY|1|L1|A|4664
7XNY|1|L1|A|4665
7XNY|1|L1|G|4666

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LW

60S ribosomal protein L24

Chain Ld

60S ribosomal protein L31