IL_7Z34_109

3D structure

PDB id

7Z34 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of pre-60S particle bound to DRG1(AFG2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGCAC*GGGUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Z34_109 not in the Motif Atlas

Geometric match to IL_4WF9_084

Geometric discrepancy: 0.3829

The information below is about IL_4WF9_084

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

7Z34|1|1|U|3231
7Z34|1|1|G|3232
7Z34|1|1|C|3233
7Z34|1|1|A|3234
7Z34|1|1|C|3235
*
7Z34|1|1|G|3252
7Z34|1|1|G|3253
7Z34|1|1|G|3254
7Z34|1|1|U|3255
7Z34|1|1|G|3256

Current chains

Chain 1

35S pre-ribosomal RNA

Nearby chains

Chain M

60S ribosomal protein L14-A