IL_7Z3O_270

3D structure

PDB id

7Z3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-associated RAC complex on the 80S ribosome - RAC-2 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CACCA*UCCCUG

Length

11 nucleotides

Bulged bases

7Z3O|1|2|C|1155, 7Z3O|1|2|C|1156

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Z3O_270 not in the Motif Atlas

Geometric match to IL_4V88_408

Geometric discrepancy: 0.3903

The information below is about IL_4V88_408

Detailed Annotation

C-loop with extra cWW pair

Broad Annotation

C-loop

Motif group

IL_11347.2

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

7Z3O|1|2|C|1153
7Z3O|1|2|A|1154
7Z3O|1|2|C|1155
7Z3O|1|2|C|1156
7Z3O|1|2|A|1157
*
7Z3O|1|2|U|1613
7Z3O|1|2|C|1614
7Z3O|1|2|C|1615
7Z3O|1|2|C|1616
7Z3O|1|2|U|1617
7Z3O|1|2|G|1618

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SF

40S ribosomal protein s5-like protein

Chain SQ

40S ribosomal protein S16-like protein

Chain Sc

40S ribosomal protein S28-like protein