IL_7ZJW_085
3D structure
- PDB id
- 7ZJW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome as it decodes the Sec-UGA codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CUCAUCAG*CUGGAG
- Length
- 14 nucleotides
- Bulged bases
- 7ZJW|1|L5|U|1869, 7ZJW|1|L5|C|1870, 7ZJW|1|L5|G|1994, 7ZJW|1|L5|A|1996
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7ZJW_085 not in the Motif Atlas
- Homologous match to IL_8C3A_054
- Geometric discrepancy: 0.2294
- The information below is about IL_8C3A_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_27086.1
- Basepair signature
- cWW-tWW-L-tWW-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
7ZJW|1|L5|C|1865
7ZJW|1|L5|U|1866
7ZJW|1|L5|C|1867
7ZJW|1|L5|A|1868
7ZJW|1|L5|U|1869
7ZJW|1|L5|C|1870
7ZJW|1|L5|A|1871
7ZJW|1|L5|G|1872
*
7ZJW|1|L5|C|1992
7ZJW|1|L5|U|1993
7ZJW|1|L5|G|1994
7ZJW|1|L5|G|1995
7ZJW|1|L5|A|1996
7ZJW|1|L5|G|1997
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LK
- 60S ribosomal protein L9
- Chain LP
- 60S ribosomal protein L14
- Chain LR
- 60S ribosomal protein uL13
- Chain LV
- 60S ribosomal protein eL20
- Chain Lp
- 60S ribosomal protein L40
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