IL_7ZJW_101

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGAUC*GGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJW_101 not in the Motif Atlas

Homologous match to IL_8C3A_073

Geometric discrepancy: 0.2614

The information below is about IL_8C3A_073

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

7ZJW|1|L5|C|2432
7ZJW|1|L5|G|2433
7ZJW|1|L5|A|2434
7ZJW|1|L5|U|2435
7ZJW|1|L5|C|2436
*
7ZJW|1|L5|G|2595
7ZJW|1|L5|G|2596
7ZJW|1|L5|G|2597
7ZJW|1|L5|A|2598
7ZJW|1|L5|G|2599

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LD

60S ribosomal protein uL2

Chain Lc

60S ribosomal protein L27

Chain Lj

60S ribosomal protein L34