IL_7ZJW_168

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CCAU*AGGCG

Length

9 nucleotides

Bulged bases

7ZJW|1|L5|C|4466

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJW_168 not in the Motif Atlas

Homologous match to IL_8C3A_123

Geometric discrepancy: 0.2308

The information below is about IL_8C3A_123

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

7ZJW|1|L5|C|4328
7ZJW|1|L5|C|4329
7ZJW|1|L5|A|4330
7ZJW|1|L5|U|4331
*
7ZJW|1|L5|A|4463
7ZJW|1|L5|G|4464
7ZJW|1|L5|G|4465
7ZJW|1|L5|C|4466
7ZJW|1|L5|G|4467

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

60S ribosomal protein L3

Chain LR

60S ribosomal protein uL13