IL_7ZJW_169
3D structure
- PDB id
- 7ZJW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome as it decodes the Sec-UGA codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CUCAGUAC*GGAACCG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7ZJW_169 not in the Motif Atlas
- Geometric match to IL_5TBW_116
- Geometric discrepancy: 0.0871
- The information below is about IL_5TBW_116
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
7ZJW|1|L5|C|4342
7ZJW|1|L5|U|4343
7ZJW|1|L5|C|4344
7ZJW|1|L5|A|4345
7ZJW|1|L5|G|4346
7ZJW|1|L5|U|4347
7ZJW|1|L5|A|4348
7ZJW|1|L5|C|4349
*
7ZJW|1|L5|G|4354
7ZJW|1|L5|G|4355
7ZJW|1|L5|A|4356
7ZJW|1|L5|A|4357
7ZJW|1|L5|C|4358
7ZJW|1|L5|C|4359
7ZJW|1|L5|G|4360
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain E
- eEFSec
- Chain F
- Selenocysteine transfer RNA
- Chain LE
- 60S ribosomal protein L3
- Chain LK
- 60S ribosomal protein L9
- Chain LY
- 60S ribosomal protein L23
- Chain Lp
- 60S ribosomal protein L40
Coloring options: