IL_7ZJW_186

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

G(PSU)U*GUCAGC

Length

9 nucleotides

Bulged bases

7ZJW|1|L5|G|4788

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJW_186 not in the Motif Atlas

Homologous match to IL_8C3A_138

Geometric discrepancy: 0.3622

The information below is about IL_8C3A_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84428.1

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

7ZJW|1|L5|G|4739
7ZJW|1|L5|PSU|4740
7ZJW|1|L5|U|4741
*
7ZJW|1|L5|G|4784
7ZJW|1|L5|U|4785
7ZJW|1|L5|C|4786
7ZJW|1|L5|A|4787
7ZJW|1|L5|G|4788
7ZJW|1|L5|C|4789

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

60S ribosomal protein L3

Chain Lg

60S ribosomal protein eL31