IL_7ZJW_249
3D structure
- PDB id
- 7ZJW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome as it decodes the Sec-UGA codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GGCC*GAAU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7ZJW_249 not in the Motif Atlas
- Geometric match to IL_4V88_430
- Geometric discrepancy: 0.0716
- The information below is about IL_4V88_430
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
7ZJW|1|S2|G|929
7ZJW|1|S2|G|930
7ZJW|1|S2|C|931
7ZJW|1|S2|C|932
*
7ZJW|1|S2|G|1011
7ZJW|1|S2|A|1012
7ZJW|1|S2|A|1013
7ZJW|1|S2|U|1014
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain Lf
- 60S ribosomal protein eL30
- Chain SB
- 40S ribosomal protein S27
- Chain SM
- 40S ribosomal protein S3a
- Chain SY
- 40S ribosomal protein uS15
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