IL_7ZJW_251

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUAU*AGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJW_251 not in the Motif Atlas

Geometric match to IL_4V88_432

Geometric discrepancy: 0.0866

The information below is about IL_4V88_432

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

7ZJW|1|S2|G|943
7ZJW|1|S2|U|944
7ZJW|1|S2|A|945
7ZJW|1|S2|U|946
*
7ZJW|1|S2|A|982
7ZJW|1|S2|G|983
7ZJW|1|S2|A|984
7ZJW|1|S2|C|985

Current chains

Chain S2

18S rRNA

Nearby chains

Chain LD

60S ribosomal protein uL2

Chain SM

40S ribosomal protein S3a

Chain SZ

40S ribosomal protein uS11