IL_7ZJW_263
3D structure
- PDB id
- 7ZJW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome as it decodes the Sec-UGA codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- ACCA*UCCCU
- Length
- 9 nucleotides
- Bulged bases
- 7ZJW|1|S2|C|1216, 7ZJW|1|S2|C|1217
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7ZJW_263 not in the Motif Atlas
- Geometric match to IL_4V88_443
- Geometric discrepancy: 0.0953
- The information below is about IL_4V88_443
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.9
- Basepair signature
- cWW-cWS-cHS-L-cWW-tWH
- Number of instances in this motif group
- 15
Unit IDs
7ZJW|1|S2|A|1215
7ZJW|1|S2|C|1216
7ZJW|1|S2|C|1217
7ZJW|1|S2|A|1218
*
7ZJW|1|S2|U|1682
7ZJW|1|S2|C|1683
7ZJW|1|S2|C|1684
7ZJW|1|S2|C|1685
7ZJW|1|S2|U|1686
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain I
- Cripavirus internal ribosome entry site (IRES); CrPV IRES
- Chain SC
- 40S ribosomal protein S28
- Chain SQ
- Ribosomal protein S5
- Chain Sb
- 40S ribosomal protein uS9
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