3D structure

PDB id
7ZJW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome as it decodes the Sec-UGA codon
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
ACCA*UCCCU
Length
9 nucleotides
Bulged bases
7ZJW|1|S2|C|1216, 7ZJW|1|S2|C|1217
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7ZJW_263 not in the Motif Atlas
Geometric match to IL_4V88_443
Geometric discrepancy: 0.0953
The information below is about IL_4V88_443
Detailed Annotation
C-loop
Broad Annotation
No text annotation
Motif group
IL_63596.9
Basepair signature
cWW-cWS-cHS-L-cWW-tWH
Number of instances in this motif group
15

Unit IDs

7ZJW|1|S2|A|1215
7ZJW|1|S2|C|1216
7ZJW|1|S2|C|1217
7ZJW|1|S2|A|1218
*
7ZJW|1|S2|U|1682
7ZJW|1|S2|C|1683
7ZJW|1|S2|C|1684
7ZJW|1|S2|C|1685
7ZJW|1|S2|U|1686

Current chains

Chain S2
18S rRNA

Nearby chains

Chain I
Cripavirus internal ribosome entry site (IRES); CrPV IRES
Chain SC
40S ribosomal protein S28
Chain SQ
Ribosomal protein S5
Chain Sb
40S ribosomal protein uS9

Coloring options:


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