IL_7ZJW_318

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

(OMU)GAAC*GAA

Length

8 nucleotides

Bulged bases

7ZJW|1|L5|A|2271

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJW_318 not in the Motif Atlas

Homologous match to IL_8C3A_482

Geometric discrepancy: 0.3313

The information below is about IL_8C3A_482

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_04395.1

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

3

Unit IDs

7ZJW|1|L5|OMU|2258
7ZJW|1|L5|G|2259
7ZJW|1|L5|A|2260
7ZJW|1|L5|A|2261
7ZJW|1|L5|C|2262
*
7ZJW|1|L5|G|2270
7ZJW|1|L5|A|2271
7ZJW|1|L5|A|2272

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LS

60S ribosomal protein uL22

Chain LU

60S ribosomal protein L19

Chain Lo

60S ribosomal protein eL39