IL_7ZJW_335

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UGUA(PSU)(OMG)*CGAAG

Length

11 nucleotides

Bulged bases

7ZJW|1|L5|U|4380, 7ZJW|1|L5|PSU|4382

QA status

Modified nucleotides: PSU, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJW_335 not in the Motif Atlas

Homologous match to IL_8C3A_127

Geometric discrepancy: 0.3134

The information below is about IL_8C3A_127

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

7ZJW|1|L5|U|4378
7ZJW|1|L5|G|4379
7ZJW|1|L5|U|4380
7ZJW|1|L5|A|4381
7ZJW|1|L5|PSU|4382
7ZJW|1|L5|OMG|4383
*
7ZJW|1|L5|C|4408
7ZJW|1|L5|G|4409
7ZJW|1|L5|A|4410
7ZJW|1|L5|A|4411
7ZJW|1|L5|G|4412

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

60S ribosomal protein L3

Chain LZ

60S ribosomal protein eL24

Chain Lg

60S ribosomal protein eL31