IL_7ZJW_347

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CCACUC*GGA(OMG)

Length

10 nucleotides

Bulged bases

7ZJW|1|S2|G|508

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJW_347 not in the Motif Atlas

Geometric match to IL_4V88_408

Geometric discrepancy: 0.1099

The information below is about IL_4V88_408

Detailed Annotation

C-loop with extra cWW pair

Broad Annotation

C-loop

Motif group

IL_11347.2

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

7ZJW|1|S2|C|492
7ZJW|1|S2|C|493
7ZJW|1|S2|A|494
7ZJW|1|S2|C|495
7ZJW|1|S2|U|496
7ZJW|1|S2|C|497
*
7ZJW|1|S2|G|507
7ZJW|1|S2|G|508
7ZJW|1|S2|A|509
7ZJW|1|S2|OMG|510

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SP

40S ribosomal protein eS4

Chain SU

40S ribosomal protein S9

Chain Sj

40S ribosomal protein S24