IL_7ZJW_356
3D structure
- PDB id
- 7ZJW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome as it decodes the Sec-UGA codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- UGCAUGG*UCUGUGAUG
- Length
- 16 nucleotides
- Bulged bases
- 7ZJW|1|S2|C|1332, 7ZJW|1|S2|U|1495, 7ZJW|1|S2|G|1498
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7ZJW_356 not in the Motif Atlas
- Homologous match to IL_8P9A_439
- Geometric discrepancy: 0.1024
- The information below is about IL_8P9A_439
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_86012.1
- Basepair signature
- cWW-tHS-tWH-cWH-cWW-L-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
7ZJW|1|S2|U|1330
7ZJW|1|S2|G|1331
7ZJW|1|S2|C|1332
7ZJW|1|S2|A|1333
7ZJW|1|S2|U|1334
7ZJW|1|S2|G|1335
7ZJW|1|S2|G|1336
*
7ZJW|1|S2|U|1493
7ZJW|1|S2|C|1494
7ZJW|1|S2|U|1495
7ZJW|1|S2|G|1496
7ZJW|1|S2|U|1497
7ZJW|1|S2|G|1498
7ZJW|1|S2|A|1499
7ZJW|1|S2|U|1500
7ZJW|1|S2|G|1501
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain F
- Selenocysteine transfer RNA
- Chain I
- Cripavirus internal ribosome entry site (IRES); CrPV IRES
- Chain SD
- 40S ribosomal protein S27a
- Chain SH
- 40S ribosomal protein uS14
- Chain SO
- 40S ribosomal protein S3
- Chain SV
- 40S ribosomal protein eS10
- Chain Sf
- 40S ribosomal protein uS10
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