IL_7ZP8_097

3D structure

PDB id

7ZP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with a stalled filamin domain 5 nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

7ZP8|1|b|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZP8_097 not in the Motif Atlas

Geometric match to IL_5J7L_345

Geometric discrepancy: 0.112

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

7ZP8|1|b|C|2636
7ZP8|1|b|U|2637
7ZP8|1|b|G|2638
7ZP8|1|b|A|2639
7ZP8|1|b|G|2640
*
7ZP8|1|b|C|2774
7ZP8|1|b|G|2775
7ZP8|1|b|A|2776
7ZP8|1|b|G|2777
7ZP8|1|b|A|2778
7ZP8|1|b|U|2779
7ZP8|1|b|G|2780
7ZP8|1|b|A|2781
7ZP8|1|b|G|2782

Current chains

Chain b

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain j

50S ribosomal protein L13