IL_7ZPQ_033

3D structure

PDB id

7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

GUGCCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

7ZPQ|1|2|A|579, 7ZPQ|1|2|U|581, 7ZPQ|1|2|U|582

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZPQ_033 not in the Motif Atlas

Homologous match to IL_4V88_415

Geometric discrepancy: 0.1077

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

7ZPQ|1|2|G|562
7ZPQ|1|2|U|563
7ZPQ|1|2|G|564
7ZPQ|1|2|C|565
7ZPQ|1|2|C|566
7ZPQ|1|2|A|567
7ZPQ|1|2|G|568
*
7ZPQ|1|2|C|575
7ZPQ|1|2|G|576
7ZPQ|1|2|G|577
7ZPQ|1|2|U|578
7ZPQ|1|2|A|579
7ZPQ|1|2|A|580
7ZPQ|1|2|U|581
7ZPQ|1|2|U|582
7ZPQ|1|2|C|583

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AD

RPS3 isoform 1

Chain AX

40S ribosomal protein S23-A

Chain Ae

40S ribosomal protein S30-A