IL_7ZPQ_046

3D structure

PDB id

7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

CGGGG*CAAG

Length

9 nucleotides

Bulged bases

7ZPQ|1|2|G|876

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZPQ_046 not in the Motif Atlas

Geometric match to IL_4V88_431

Geometric discrepancy: 0.0889

The information below is about IL_4V88_431

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

7ZPQ|1|2|C|874
7ZPQ|1|2|G|875
7ZPQ|1|2|G|876
7ZPQ|1|2|G|877
7ZPQ|1|2|G|878
*
7ZPQ|1|2|C|950
7ZPQ|1|2|A|951
7ZPQ|1|2|A|952
7ZPQ|1|2|G|953

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AB

40S ribosomal protein S1

Chain AN

40S ribosomal protein S13

Chain Aa

RPS26B isoform 1