IL_7ZPQ_139
3D structure
- PDB id
- 7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.47 Å
Loop
- Sequence
- GAGGUAA*UAAAUAU
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7ZPQ_139 not in the Motif Atlas
- Homologous match to IL_5TBW_038
- Geometric discrepancy: 0.075
- The information below is about IL_5TBW_038
- Detailed Annotation
- 7x7 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_93830.3
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
7ZPQ|1|5|G|991
7ZPQ|1|5|A|992
7ZPQ|1|5|G|993
7ZPQ|1|5|G|994
7ZPQ|1|5|U|995
7ZPQ|1|5|A|996
7ZPQ|1|5|A|997
*
7ZPQ|1|5|U|1052
7ZPQ|1|5|A|1053
7ZPQ|1|5|A|1054
7ZPQ|1|5|A|1055
7ZPQ|1|5|U|1056
7ZPQ|1|5|A|1057
7ZPQ|1|5|U|1058
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain 4
- 5S ribosomal RNA; 5S rRNA
- Chain BD
- RPL5 isoform 1
- Chain BF
- 60S ribosomal protein L7-A
- Chain BI
- RPL10 isoform 1
- Chain BS
- 60S ribosomal protein L21-A
Coloring options: