IL_7ZPQ_144

3D structure

PDB id

7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

GUUCCG*UGAC

Length

10 nucleotides

Bulged bases

7ZPQ|1|5|C|1016, 7ZPQ|1|5|C|1017

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZPQ_144 not in the Motif Atlas

Homologous match to IL_5TBW_043

Geometric discrepancy: 0.2564

The information below is about IL_5TBW_043

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_71110.1

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

10

Unit IDs

7ZPQ|1|5|G|1013
7ZPQ|1|5|U|1014
7ZPQ|1|5|U|1015
7ZPQ|1|5|C|1016
7ZPQ|1|5|C|1017
7ZPQ|1|5|G|1018
*
7ZPQ|1|5|U|1034
7ZPQ|1|5|G|1035
7ZPQ|1|5|A|1036
7ZPQ|1|5|C|1037

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain BJ

RPL11B isoform 1