IL_7ZPQ_243
3D structure
- PDB id
- 7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.47 Å
Loop
- Sequence
- UGCAUGG*UCUGUGAUG
- Length
- 16 nucleotides
- Bulged bases
- 7ZPQ|1|2|C|1274, 7ZPQ|1|2|U|1432, 7ZPQ|1|2|G|1435
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7ZPQ_243 not in the Motif Atlas
- Homologous match to IL_8P9A_439
- Geometric discrepancy: 0.1414
- The information below is about IL_8P9A_439
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_99893.1
- Basepair signature
- cWW-tHS-tWH-cWH-cWW-L-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
7ZPQ|1|2|U|1272
7ZPQ|1|2|G|1273
7ZPQ|1|2|C|1274
7ZPQ|1|2|A|1275
7ZPQ|1|2|U|1276
7ZPQ|1|2|G|1277
7ZPQ|1|2|G|1278
*
7ZPQ|1|2|U|1430
7ZPQ|1|2|C|1431
7ZPQ|1|2|U|1432
7ZPQ|1|2|G|1433
7ZPQ|1|2|U|1434
7ZPQ|1|2|G|1435
7ZPQ|1|2|A|1436
7ZPQ|1|2|U|1437
7ZPQ|1|2|G|1438
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain AD
- RPS3 isoform 1
- Chain AK
- 40S ribosomal protein S10-A
- Chain AU
- RPS20 isoform 1
- Chain Ad
- RPS29A isoform 1
Coloring options: