IL_7ZPQ_248

3D structure

PDB id

7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

GUGGC*GAAUC

Length

10 nucleotides

Bulged bases

7ZPQ|1|5|G|1236, 7ZPQ|1|5|A|1251

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZPQ_248 not in the Motif Atlas

Homologous match to IL_8P9A_283

Geometric discrepancy: 0.5685

The information below is about IL_8P9A_283

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_16218.3

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

7ZPQ|1|5|G|1234
7ZPQ|1|5|U|1235
7ZPQ|1|5|G|1236
7ZPQ|1|5|G|1237
7ZPQ|1|5|C|1238
*
7ZPQ|1|5|G|1250
7ZPQ|1|5|A|1251
7ZPQ|1|5|A|1252
7ZPQ|1|5|U|1253
7ZPQ|1|5|C|1254

Current chains

Chain 5

25S ribosomal RNA

Nearby chains