IL_7ZPQ_249

3D structure

PDB id

7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

UCAAC*GGA

Length

8 nucleotides

Bulged bases

7ZPQ|1|5|G|1514

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZPQ_249 not in the Motif Atlas

Homologous match to IL_8C3A_482

Geometric discrepancy: 0.0948

The information below is about IL_8C3A_482

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_04395.1

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

3

Unit IDs

7ZPQ|1|5|U|1501
7ZPQ|1|5|C|1502
7ZPQ|1|5|A|1503
7ZPQ|1|5|A|1504
7ZPQ|1|5|C|1505
*
7ZPQ|1|5|G|1513
7ZPQ|1|5|G|1514
7ZPQ|1|5|A|1515

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain BO

60S ribosomal protein L17-A

Chain BQ

60S ribosomal protein L19-A

Chain Bk

60S ribosomal protein L39