IL_7ZQ5_072

3D structure

PDB id

7ZQ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with truncated uL23 and uL24 loops

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

7ZQ5|1|b|A|1801, 7ZQ5|1|b|C|1816, 7ZQ5|1|b|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZQ5_072 not in the Motif Atlas

Geometric match to IL_5J7L_313

Geometric discrepancy: 0.0772

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

7ZQ5|1|b|U|1798
7ZQ5|1|b|G|1799
7ZQ5|1|b|C|1800
7ZQ5|1|b|A|1801
7ZQ5|1|b|A|1802
7ZQ5|1|b|A|1803
7ZQ5|1|b|C|1804
*
7ZQ5|1|b|G|1813
7ZQ5|1|b|G|1814
7ZQ5|1|b|A|1815
7ZQ5|1|b|C|1816
7ZQ5|1|b|G|1817
7ZQ5|1|b|U|1818
7ZQ5|1|b|A|1819
7ZQ5|1|b|U|1820
7ZQ5|1|b|A|1821

Current chains

Chain b

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L2