IL_7ZTA_060

3D structure

PDB id

7ZTA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of an Escherichia coli 70S ribosome stalled by Tetracenomycin X during translation of an MAAAPQK(C) peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAAG*CGGACC

Length

10 nucleotides

Bulged bases

7ZTA|1|16S1|A|1257, 7ZTA|1|16S1|A|1280, 7ZTA|1|16S1|C|1281

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZTA_060 not in the Motif Atlas

Homologous match to IL_5J7L_055

Geometric discrepancy: 0.1872

The information below is about IL_5J7L_055

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_11344.2

Basepair signature

cWW-cSS-L-cWW

Number of instances in this motif group

2

Unit IDs

7ZTA|1|16S1|G|1255
7ZTA|1|16S1|A|1256
7ZTA|1|16S1|A|1257
7ZTA|1|16S1|G|1258
*
7ZTA|1|16S1|C|1277
7ZTA|1|16S1|G|1278
7ZTA|1|16S1|G|1279
7ZTA|1|16S1|A|1280
7ZTA|1|16S1|C|1281
7ZTA|1|16S1|C|1282

Current chains

Chain 16S1

16S ribosomal RNA

Nearby chains

Chain S031

30S ribosomal protein S3

Chain S101

30S ribosomal protein S10

Chain S141

30S ribosomal protein S14