IL_7ZTA_105

3D structure

PDB id

7ZTA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of an Escherichia coli 70S ribosome stalled by Tetracenomycin X during translation of an MAAAPQK(C) peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

7ZTA|1|23S1|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZTA_105 not in the Motif Atlas

Homologous match to IL_5J7L_280

Geometric discrepancy: 0.0681

The information below is about IL_5J7L_280

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

7ZTA|1|23S1|U|1018
7ZTA|1|23S1|U|1019
7ZTA|1|23S1|A|1020
7ZTA|1|23S1|A|1021
7ZTA|1|23S1|G|1022
7ZTA|1|23S1|U|1023
7ZTA|1|23S1|G|1024
*
7ZTA|1|23S1|C|1140
7ZTA|1|23S1|U|1141
7ZTA|1|23S1|A|1142
7ZTA|1|23S1|A|1143
7ZTA|1|23S1|A|1144

Current chains

Chain 23S1

23S ribosomal RNA

Nearby chains

Chain L131

50S ribosomal protein L13

Chain L361

50S ribosomal protein L36