IL_7ZUW_032

3D structure

PDB id

7ZUW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RQT (C1) bound to the stalled ribosome in a disome unit from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GUGCCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

7ZUW|1|2|A|579, 7ZUW|1|2|U|581, 7ZUW|1|2|U|582

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZUW_032 not in the Motif Atlas

Homologous match to IL_4V88_415

Geometric discrepancy: 0.1494

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

7ZUW|1|2|G|562
7ZUW|1|2|U|563
7ZUW|1|2|G|564
7ZUW|1|2|C|565
7ZUW|1|2|C|566
7ZUW|1|2|A|567
7ZUW|1|2|G|568
*
7ZUW|1|2|C|575
7ZUW|1|2|G|576
7ZUW|1|2|G|577
7ZUW|1|2|U|578
7ZUW|1|2|A|579
7ZUW|1|2|A|580
7ZUW|1|2|U|581
7ZUW|1|2|U|582
7ZUW|1|2|C|583

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AD

RPS3 isoform 1

Chain AX

40S ribosomal protein S23-A

Chain Ae

40S ribosomal protein S30-A