IL_7ZUW_075

3D structure

PDB id

7ZUW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RQT (C1) bound to the stalled ribosome in a disome unit from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GGGAUA*UUCAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZUW_075 not in the Motif Atlas

Geometric match to IL_4LFB_055

Geometric discrepancy: 0.1934

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

7ZUW|1|2|G|1540
7ZUW|1|2|G|1541
7ZUW|1|2|G|1542
7ZUW|1|2|A|1543
7ZUW|1|2|U|1544
7ZUW|1|2|A|1545
*
7ZUW|1|2|U|1566
7ZUW|1|2|U|1567
7ZUW|1|2|C|1568
7ZUW|1|2|A|1569
7ZUW|1|2|A|1570
7ZUW|1|2|C|1571

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AS

40S ribosomal protein S18-A

Chain AT

40S ribosomal protein S19-A

Chain AZ

40S ribosomal protein S25