IL_8A5I_013
3D structure
- PDB id
- 8A5I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Lincomycin bound to the Listeria monocytogenes 50S ribosomal subunit.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- GCAC*GAGUGAAACAGUUC
- Length
- 18 nucleotides
- Bulged bases
- 8A5I|1|A|C|549
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8A5I_013 not in the Motif Atlas
- Homologous match to IL_4WF9_015
- Geometric discrepancy: 0.3862
- The information below is about IL_4WF9_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_44923.2
- Basepair signature
- cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
- Number of instances in this motif group
- 10
Unit IDs
8A5I|1|A|G|527
8A5I|1|A|C|528
8A5I|1|A|A|529
8A5I|1|A|C|530
*
8A5I|1|A|G|541
8A5I|1|A|A|542
8A5I|1|A|G|543
8A5I|1|A|U|544
8A5I|1|A|G|545
8A5I|1|A|A|546
8A5I|1|A|A|547
8A5I|1|A|A|548
8A5I|1|A|C|549
8A5I|1|A|A|550
8A5I|1|A|G|551
8A5I|1|A|U|552
8A5I|1|A|U|553
8A5I|1|A|C|554
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain V
- 50S ribosomal protein L22
- Chain W
- 50S ribosomal protein L23
- Chain X
- 50S ribosomal protein L24
Coloring options: