IL_8AGU_028
3D structure
- PDB id
- 8AGU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast RQC complex in state E
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GAAAG*CUAGUAGC
- Length
- 13 nucleotides
- Bulged bases
- 8AGU|1|f|A|933, 8AGU|1|f|G|937
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8AGU_028 not in the Motif Atlas
- Geometric match to IL_5TBW_028
- Geometric discrepancy: 0.0686
- The information below is about IL_5TBW_028
- Detailed Annotation
- tHW-tHW cross-strand stack
- Broad Annotation
- No text annotation
- Motif group
- IL_17470.7
- Basepair signature
- cWW-tWW-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
8AGU|1|f|G|805
8AGU|1|f|A|806
8AGU|1|f|A|807
8AGU|1|f|A|808
8AGU|1|f|G|809
*
8AGU|1|f|C|931
8AGU|1|f|U|932
8AGU|1|f|A|933
8AGU|1|f|G|934
8AGU|1|f|U|935
8AGU|1|f|A|936
8AGU|1|f|G|937
8AGU|1|f|C|938
Current chains
- Chain f
- 25S rRNA
Nearby chains
- Chain A
- 60S ribosomal protein L15-A
- Chain N
- 60S ribosomal protein L28
- Chain W
- 60S ribosomal protein L37-A
- Chain l
- BJ4_G0008850.mRNA.1.CDS.1
- Chain t
- 60S ribosomal protein L13-A
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