IL_8B2L_052
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GCAUCG*CGAC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8B2L_052 not in the Motif Atlas
- Homologous match to IL_5TBW_043
- Geometric discrepancy: 0.25
- The information below is about IL_5TBW_043
- Detailed Annotation
- Other IL
- Broad Annotation
- Other IL
- Motif group
- IL_71110.1
- Basepair signature
- cWW-cWW-L-R-cWW
- Number of instances in this motif group
- 10
Unit IDs
8B2L|1|A3|G|1025
8B2L|1|A3|C|1026
8B2L|1|A3|A|1027
8B2L|1|A3|U|1028
8B2L|1|A3|C|1029
8B2L|1|A3|G|1030
*
8B2L|1|A3|C|1046
8B2L|1|A3|G|1047
8B2L|1|A3|A|1048
8B2L|1|A3|C|1049
Current chains
- Chain A3
- 25S rRNA
Nearby chains
- Chain g3
- uL16 (60S ribosomal protein L10)
- Chain h3
- 60S ribosomal protein L5-like
- Chain i2
- Transfer RNA; tRNA
- Chain t3
- uL5 (60S ribosomal protein L11)
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